SAAVretrieval manual

SAAVretrieval manualY.-M. Kang2018-03-20T09:33:18+00:00

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0. Contents
1. Introduction
2. Data Source
3. Preparation of input files
– 3.1 SAAV peptide search
– 3.2 Input file format
- — 3.2.1 SAAV peptide list
- — 3.2.2 SAAV-calling format
4. Usage
– 4.1 Test data
– 4.2 Proteogenomic interpretation pipeline
– 4.3 Web interface
– 4.4 Python stand-alone program
- — 4.4.1 Installation of the SAAVpedia Python package
- — 4.4.2 Use of the Proteogenomic Interpretation Pipeline
– 4.5 REST API
5. User manual
– 5.1 Web interface panel
– 5.2 Python stand-alone program
– 5.3 REST API